Pathway genetic load allows simultaneous evaluation of multiple genetic associations
Accepted 4 February 2010.
Abstract
Objective
Despite the general success of genome-wide association studies, much heritability remains unidentified in many disease states. Some of this ‘missing’ heritability may lie in epistatic interactions among multiple loci, which are typically ignored. We utilized a method for simultaneous evaluation of epistatic interactions between allelic variations within genes confined to a single pathway, which we have termed as pathway genetic load (PGL).
Methods
In separate analyses, we evaluated the risk for sepsis and for death associated with alleles at six loci in the TLR4 signaling and response pathway previously known or suspected to be linked to the development of sepsis after traumatic injury. We evaluated 155 patients with ≥15% TBSA burns and without significant non-burn trauma [ISS≤16], traumatic or anoxic brain injury or spinal cord injury, who survived >48h post-admission. Clinical data were collected prospectively and candidate genotypes were determined by TaqMan assay.
Results
After adjustment for burn size, inhalation injury, age, gender and race, PGL was associated with increased probability for complicated sepsis (aOR=1.59; 95%CI=1.11–2.29; p=0.011) and death (aOR=1.75; 95%CI=1.11–2.76; p=0.017).
Conclusion
Relative size and variability of aORs indicate greater power to detect genetic associations with PGL compared to the analysis of loci individually by multivariate logistic regression.
aDepartment of Surgery, The University of Texas Southwestern Medical Center, 5323 Harry Hines Blvd., Dallas, TX 75390, USA
bDepartment of Psychiatry, The University of Texas Southwestern Medical Center, 5323 Harry Hines Blvd., Dallas, TX 75390, USA
cDepartment of Internal Medicine and Biochemistry, The University of Texas Southwestern Medical Center, 5323 Harry Hines Blvd., Dallas, TX 75390, USA
Corresponding author at: Department of Surgery, UT Southwestern Medical Center, 5323 Harry Hines Blvd., Dallas, TX 75390-9160, USA. Tel.: +1 214 648 8043; fax: +1 214 648 8420.
ABSTRACT